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Classes | Public Member Functions | Static Public Member Functions | Static Public Attributes | Package Attributes

MaqDataClient Class Reference

List of all members.


class  Read

Public Member Functions

void close () throws Exception
void getMaqData (int ref_id, long start, long end) throws Exception

Static Public Member Functions

static MaqDataClient connect (String host, int port) throws Exception
static int converseInt (int v)
static long converseLong (long v)
static void main (String[] argv) throws Exception

Static Public Attributes

static char[] nst_nt16_rev_table = {'X', 'A', 'C', 'M', 'G', 'R', 'S', 'V', 'T', 'W', 'Y', 'H', 'K', 'D', 'B', 'N'}
static int VIEW_OP_CLOSE = 0
static int VIEW_OP_FETCH = 3
static int VIEW_OP_GOTO = 2
static int VIEW_OP_INFO = 1

Package Attributes

StringBuffer cns_seqs = new StringBuffer(256)
long end = -1
int last_code = 0
int n_ref = 0
ArrayList reads = new ArrayList(1024)
int ref_id = 0
ArrayList ref_lengths = new ArrayList()
ArrayList ref_names = new ArrayList()
StringBuffer ref_seqs = new StringBuffer(256)
Socket socket = null
long start = 0

Detailed Description

Definition at line 9 of file MaqDataClient.java.

The documentation for this class was generated from the following file:

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